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a The schematic diagram of the APA-rsfMRI experiment. b The left diagram shows the setup of the APA task. Four distinct pictures were hung on the surrounding walls as visual cues. The orange arrow indicates the direction of rotation. The 60 o sector in red shows the location of the invisible “shock zone”. The two plots on the right show the progressive decrease in the number of shocks over the trials (two-way ANOVA, F 5, 80 = 14.22, p < 0.0001), which is comparable between the 1-Day ( N = 10) and 5-Day APA ( N = 8) groups ( F 1, 16 = 0.55, p = 0.47 for groups). Similar trends can be seen in the time to first entrance of the shock zone (two-way ANOVA, F 5, 80 = 6.63, p < 0.0001 for training trials, F 1, 16 = 1.27, p = 0.28 for groups). Post hoc comparisons were performed between the last training trial (T5) and other training trials (T1–T4) or probe test (PT) with Dunnett’s multiple comparison test. The number of shocks for 1-Day APA: T1, p = 7.1 × 10 −6 ; T2, p = 7.1 × 10 −6 ; T3, p = 0.00016; 5-Day APA: T1, p = 1.9 × 10 −5 ; T2, p = 0.00051. The time to first entrance for 1-Day APA: T1, p = 0.016; T2, p = 0.017; T3, p = 0.018; 5-Day APA: T1, p = 0.034. Data are represented as mean ± SEM. * p < 0.05; *** p < 0.001; **** p < 0.0001. c The seed-based correlation analysis used to create the FC matrix of each animal. d Changed functional connections in the 1-Day and 5-Day APA, compared to their corresponding controls, on post-training day 1 and post-training day 8 (two-sample t-test, two-tailed, p < 0.05, FDR corrected; see Supplementary Table for N of each group). The red connections represent APA > control while the blue connections represent APA <control. The line thickness indicates the t value. e Two functional connections from the 1-Day APA post-training day 8 correlated with the memory retention probe test ( N = 8; Pearson correlation, two-tailed). See Supplementary Table for the abbreviations of brain regions. Number of animals is from biologically independent mice. Source data are provided as a file. Significant connections were overlaid on the 3D-rendered brain atlas using <t>BrainNet</t> Viewer for ( d) . ( https://www.nitrc.org/projects/bnv/ ), Copyright © 2007 Free Software Foundation, Inc.
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a The schematic diagram of the APA-rsfMRI experiment. b The left diagram shows the setup of the APA task. Four distinct pictures were hung on the surrounding walls as visual cues. The orange arrow indicates the direction of rotation. The 60 o sector in red shows the location of the invisible “shock zone”. The two plots on the right show the progressive decrease in the number of shocks over the trials (two-way ANOVA, F 5, 80 = 14.22, p < 0.0001), which is comparable between the 1-Day ( N = 10) and 5-Day APA ( N = 8) groups ( F 1, 16 = 0.55, p = 0.47 for groups). Similar trends can be seen in the time to first entrance of the shock zone (two-way ANOVA, F 5, 80 = 6.63, p < 0.0001 for training trials, F 1, 16 = 1.27, p = 0.28 for groups). Post hoc comparisons were performed between the last training trial (T5) and other training trials (T1–T4) or probe test (PT) with Dunnett’s multiple comparison test. The number of shocks for 1-Day APA: T1, p = 7.1 × 10 −6 ; T2, p = 7.1 × 10 −6 ; T3, p = 0.00016; 5-Day APA: T1, p = 1.9 × 10 −5 ; T2, p = 0.00051. The time to first entrance for 1-Day APA: T1, p = 0.016; T2, p = 0.017; T3, p = 0.018; 5-Day APA: T1, p = 0.034. Data are represented as mean ± SEM. * p < 0.05; *** p < 0.001; **** p < 0.0001. c The seed-based correlation analysis used to create the FC matrix of each animal. d Changed functional connections in the 1-Day and 5-Day APA, compared to their corresponding controls, on post-training day 1 and post-training day 8 (two-sample t-test, two-tailed, p < 0.05, FDR corrected; see Supplementary Table for N of each group). The red connections represent APA > control while the blue connections represent APA <control. The line thickness indicates the t value. e Two functional connections from the 1-Day APA post-training day 8 correlated with the memory retention probe test ( N = 8; Pearson correlation, two-tailed). See Supplementary Table for the abbreviations of brain regions. Number of animals is from biologically independent mice. Source data are provided as a file. Significant connections were overlaid on the 3D-rendered brain atlas using BrainNet Viewer for ( d) . ( https://www.nitrc.org/projects/bnv/ ), Copyright © 2007 Free Software Foundation, Inc.

Journal: Nature Communications

Article Title: Locating causal hubs of memory consolidation in spontaneous brain network in male mice

doi: 10.1038/s41467-023-41024-z

Figure Lengend Snippet: a The schematic diagram of the APA-rsfMRI experiment. b The left diagram shows the setup of the APA task. Four distinct pictures were hung on the surrounding walls as visual cues. The orange arrow indicates the direction of rotation. The 60 o sector in red shows the location of the invisible “shock zone”. The two plots on the right show the progressive decrease in the number of shocks over the trials (two-way ANOVA, F 5, 80 = 14.22, p < 0.0001), which is comparable between the 1-Day ( N = 10) and 5-Day APA ( N = 8) groups ( F 1, 16 = 0.55, p = 0.47 for groups). Similar trends can be seen in the time to first entrance of the shock zone (two-way ANOVA, F 5, 80 = 6.63, p < 0.0001 for training trials, F 1, 16 = 1.27, p = 0.28 for groups). Post hoc comparisons were performed between the last training trial (T5) and other training trials (T1–T4) or probe test (PT) with Dunnett’s multiple comparison test. The number of shocks for 1-Day APA: T1, p = 7.1 × 10 −6 ; T2, p = 7.1 × 10 −6 ; T3, p = 0.00016; 5-Day APA: T1, p = 1.9 × 10 −5 ; T2, p = 0.00051. The time to first entrance for 1-Day APA: T1, p = 0.016; T2, p = 0.017; T3, p = 0.018; 5-Day APA: T1, p = 0.034. Data are represented as mean ± SEM. * p < 0.05; *** p < 0.001; **** p < 0.0001. c The seed-based correlation analysis used to create the FC matrix of each animal. d Changed functional connections in the 1-Day and 5-Day APA, compared to their corresponding controls, on post-training day 1 and post-training day 8 (two-sample t-test, two-tailed, p < 0.05, FDR corrected; see Supplementary Table for N of each group). The red connections represent APA > control while the blue connections represent APA

Article Snippet: Significant connections were overlaid on the 3D-rendered brain atlas using BrainNet Viewer for ( b ) and ( c ) ( https://www.nitrc.org/projects/bnv/ ), Copyright © 2007 Free Software Foundation, Inc. We found behavior-correlated common networks composed of the hippocampus, mPFC and thalamus in the left hemisphere, and the connection between the primary somatosensory and primary visual (V1) cortex in the right hemisphere on post-training day 1 (Fig. , Supplementary Table ).

Techniques: Comparison, Functional Assay, Two Tailed Test, Control, Software

a Procedures for identifying target hubs based on common networks that correlate with behaviors in the probe test (PT). The difference FC matrix between the APA and control (Ctl) groups was calculated by two-sample t-test. The FC on ( b ) post-training day 1 ( N = 17) and ( c ) post-training day 8 ( N = 16) that correlated with N shock (Pearson correlation, p < 0.05, two-tailed, uncorrected) within the common networks ( p < 0.05, uncorrected) of the 1-Day and 5-Day APA. The red lines show the functional connections that positively correlate with N shock while the blue lines show those that negatively correlate with N shock . The line width indicates the absolute r value. The cumulative distribution of the 5000 permutation tests is shown on the right. The red bars represent the cumulative probability before reaching the real number of edges (9 connections on post-training day 1 and 5 connections on post-training day 8). Behavioral correlation (Pearson correlation, two-tailed) of the functional connections with the target hubs on ( d ) post-training day 1 ( N = 17) and ( e ) post-training day 8 ( N = 16). See Supplementary Table for the abbreviations of brain regions. Number of animals is from biologically independent mice. Source data are provided as a file. Significant connections were overlaid on the 3D-rendered brain atlas using BrainNet Viewer for ( b ) and ( c ) ( https://www.nitrc.org/projects/bnv/ ), Copyright © 2007 Free Software Foundation, Inc.

Journal: Nature Communications

Article Title: Locating causal hubs of memory consolidation in spontaneous brain network in male mice

doi: 10.1038/s41467-023-41024-z

Figure Lengend Snippet: a Procedures for identifying target hubs based on common networks that correlate with behaviors in the probe test (PT). The difference FC matrix between the APA and control (Ctl) groups was calculated by two-sample t-test. The FC on ( b ) post-training day 1 ( N = 17) and ( c ) post-training day 8 ( N = 16) that correlated with N shock (Pearson correlation, p < 0.05, two-tailed, uncorrected) within the common networks ( p < 0.05, uncorrected) of the 1-Day and 5-Day APA. The red lines show the functional connections that positively correlate with N shock while the blue lines show those that negatively correlate with N shock . The line width indicates the absolute r value. The cumulative distribution of the 5000 permutation tests is shown on the right. The red bars represent the cumulative probability before reaching the real number of edges (9 connections on post-training day 1 and 5 connections on post-training day 8). Behavioral correlation (Pearson correlation, two-tailed) of the functional connections with the target hubs on ( d ) post-training day 1 ( N = 17) and ( e ) post-training day 8 ( N = 16). See Supplementary Table for the abbreviations of brain regions. Number of animals is from biologically independent mice. Source data are provided as a file. Significant connections were overlaid on the 3D-rendered brain atlas using BrainNet Viewer for ( b ) and ( c ) ( https://www.nitrc.org/projects/bnv/ ), Copyright © 2007 Free Software Foundation, Inc.

Article Snippet: Significant connections were overlaid on the 3D-rendered brain atlas using BrainNet Viewer for ( b ) and ( c ) ( https://www.nitrc.org/projects/bnv/ ), Copyright © 2007 Free Software Foundation, Inc. We found behavior-correlated common networks composed of the hippocampus, mPFC and thalamus in the left hemisphere, and the connection between the primary somatosensory and primary visual (V1) cortex in the right hemisphere on post-training day 1 (Fig. , Supplementary Table ).

Techniques: Control, Two Tailed Test, Functional Assay, Software